In a multicenter-project run by the Infectious Diseases Institute (IDI) and Charité Universitaetsmedizin Berlin including further clinical and research institutions in Rwanda and DR Congo, a total of 3,600 malaria patients will be recruited at nine sentinel sites and in two recruitment rounds. Mutations of the parasite Plasmodium falciparum predicting artemisinin resistance (K13 gene, MDR1 gene) will be genotyped. Alongside sample collection, patients will be interviewed, questionnaire-based, on potential determinants of emerging artemisinin resistance, including, among others, preferred health care procedures in case of sickness, sources of antimalarial drug consumption, herbal remedies, socio-economic status. The analysis of determinants of artemisinin resistance will be conducted for the whole sample population and stratified by country.
The student is invited to do their MSc thesis within the ARMEA project. Formal supervision at IDI will be provided by Dr Benard S. Bagaya, and additional laboratory training and supervision, as well as quality control will be provided by staff at CHUB, Rwanda. The student will be included in the international ARMEA consortium and is invited to attend a 2-week training in Rwanda. Continuous online mentoring is provided for education in molecular techniques and analysis from the team at CHUB, Rwanda, and at Charité, Germany.
Key Responsibilities
- Receiving, registering, and storing 1,200 samples from Uganda (approx. 50% dried blood spots and 500% whole blood) at the IDI lab
- Aliquoting of samples, if necessary
- DNA extraction from each sample
- PCR of three targets on all samples (K13, MDR1-reg1, MDR1-reg2)
- Gel electrophoresis of all amplicons
- Prepare sequencing plates of positive amplicons
- Assist with cryopreservation
- Sanger sequencing analysis
- Data management and analysis of molecular data
Academic Qualifications
- A student pursing a Masters in Immunology and Microbiology in their final year
Person Specification
A student pursing a Masters in Immunology and Microbiology in their final year
